Synthesis of thiol-containing DNA-oligonucleotides using a phosphoramidite reagent based on trans -4-hydroxy-L-prolinol
https://doi.org/10.29235/1561-8331-2024-60-1-36-44
Abstract
In this work, a new phosphoramidite reagent for the preparation of thiol-modified oligonucleotides was synthesized. Thiol-specific reagents have been used to demonstrate the reactivity of thiol groups. After modification, conjugates were purified via gel-filtration and characterized with HPLC-MS.
Keywords
About the Authors
Y. P. LamekinaBelarus
Yuliya P. Lamekina – Researcher.
13, Surganov Str., 220072, Minsk
T. P. Seviarynchyk
Belarus
Tatsiana P. Seviarynchyk – Researcher.
13, Surganov Str., 220072, Minsk
E. A. Ulashchik
Belarus
Egor A. Ulashchik – Researcher.
13, Surganov Str., 220072, Minsk
T. P. Akhlamionok
Belarus
Tatsiana P. Akhlamionok – Junior Researcher.
13, Surganov Str., 220072, Minsk
P. Y. Baryshchyk
Belarus
Palina Y. Baryshchyk – Junior Researcher.
13, Surganov Str., 220072, Minsk
B. V. Ranishenka
Belarus
Bahdan V. Ranishenka – Ph. D. (Chemistry), Researcher.
13, Surganov Str., 220072, Minsk
V. V. Shmanai
Belarus
Vadim V. Shmanai – Ph. D. (Chemistry), Head of the Laboratory.
13, Surganov Str., 220072, Minsk
References
1. Connoly B. A., Rider P. Chemical synthesis of oligonucleotides containing a free sulphydryl group and subsequent attachment of thiol specific probes. Nucleic Acids Research, 1985, vol. 13, no. 12, pp. 4485–4502. https://doi.org/10.1093/nar/13.12.4485
2. Beaucage S. L., Iyer R. P. The functionalization of oligonucleotides via phosphoramidite derivatives. Tetrahedron, 1993, vol. 49, no. 10, pp. 1925–1963. https://doi.org/10.1016/S0040-4020(01)86295-5
3. Nakagami S., Matsunaga H., Oka N., Yamane A. Preparation of enzyme-conjugated DNA probe and application to the universal probe system. Analytical Bicohemistry, 1991, vol. 198, no. 1, pp. 75–79. https://doi.org/10.1016/0003-2697(91)90508-q
4. Ghosh S. S., Kao P. M., McCue A. W., Chappelle H. L. Use of maleimide-thiol coupling chemistry for efficient syntheses of oligonucleotide-enzyme conjugate hybridization probes. Bioconjugate Chemistry, 1990, vol. 1, no. 1, pp. 71–76. https://doi.org/10.1021/bc00001a009
5. Demers L. M., Mirkin C. A., Mucic R. C., Reynolds R. A. 3rd, Letsinger R. L., Elghanian R., Viswanadham G. A fluorescence-based method for determining the surface coverage and hybridization efficiency of thiol-capped oligonucleotides bound to gold thin films and nanoparticles. Analytical Chemistry, 2000, vol. 72, no. 22, pp. 5535–5541. https://doi.org/10.1021/ac0006627
6. Lee J. S., Han M. S., Mirkin C. A. Colorimetric detection of mercuric ion (Hg2+) in aqueous media using DNA-functionalized gold nanoparticles. Angewandte Chemie International Edition, 2007, vol. 46, no. 22, pp. 4093–4096. https://doi.org/10.1002/anie.200700269
7. Armarego W. L. F., Chai C. L. L. Purification of laboratory chemicals. 6th ed. Burlington, Butterworth-Heinemann, Elsevier Inc., 2009. 752 p.
8. Bannwarth W., Trzeciak A. A simple and effective chemical phosphorylation procedure for biomolecules. Helvetica Chimica Acta, 1987, vol. 70, no. 1, pp. 175–186. https://doi.org/10.1002/hlca.19870700122
9. Caruthers M. H., Barone A. D., Beaucage S. L., Dodds D. R., Fisher E. F., McBride L. J., Matteucci M., Stabinsky Z., Tang J.-Y. Chemical synthesis of deoxyoligonucleotides by the phosphoramidite method. Methods in Enzymology, 1987, vol. 154, pp. 287–313. https://doi.org/10.1016/0076-6879(87)54081-2
10. Tatulchenkov M. Yu., Prokhorenko I. A., Kvach M. V., Navakouski M. E., Stepanova I. A., Pilchenko N. V., Gontarev S. V., Sharko O. L., Korshun V. A., Shmanai V. V. Phosphoramidite reagents and solid-phase supports based on hydroxyprolinol for the synthesis of modified oligonucleotides. Russian Journal of Bioorganic Chemistry, 2017, vol. 43, no. 4, pp. 386–396. https://doi.org/10.1134/s1068162017040148
11. Streck R., Barnes A. J. Solvent effects on infrared, 13C and 31P NMR spectra of trimethyl phosphate: Part 1. Single solvent systems. Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy, 1999, vol. 55, no. 5, pp. 1049–1057. https://doi.org/10.1016/S1386-1425(98)00277-7
12. Tecilla P., Jubian V., Hamilton A. D. Synthetic hydrogen bonding receptors as models of transacylase enzymes. Tetrahedron, 1995, vol. 51, no. 2, pp. 435–448. https://doi.org/10.1016/0040-4020(94)00907-C
13. Fomich M. A., Kvach M. V., Navakouski M. J., Weise C., Baranovsky A. V., Korshun V. A., Shmanai V. V. Azide phosphoramidite in direct synthesis of azide-modified oligonucleotides. Organic Letters, 2014, vol. 16, no. 17, pp. 4590–4593. https://doi.org/10.1021/ol502155g