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New lipophilic conjugates of fluorescent NBD-piperazine: synthesis, in silico interactions with lipid bilayer and cytochromes P450

https://doi.org/10.29235/1561-8331-2022-58-1-62-67

Abstract

Two new fluorescent NBD-piperazine derivatives with lipophilic substituents of formylcholesterol and hexanoic acid (compounds 2 and 3, respectively) were synthesized. Using in silico calculations, their abilities to permeate through lipid bilayer and to be bound affinely with some cytochromes P450 of human (2 with lanosterol 14α-demethylase CYP51, 3 with drug-metabolizing CYP1A1, CYP2D6, CYP3A4; energy of binding Ebind from –14.4 to –10 kcal/mol) and of mycobacteria (2 with sterol 27-hydroxylase CYP125, 3 with “orphan” CYP164; Ebind from –13.3 to –9.1 kcal/mol) were demonstrated. The synthesized compounds and calculated computational data will contribute to prioritization of in vitro investigations aiming to revealing properties of the proteins.

About the Authors

Y. V. Faletrov
Belarusian State University; Research Institute for Physical Chemical Problems of the Belarusian State University
Belarus

Faletrov Yaroslav V. – Ph. D. (Chemistry), Associate Professor, Leading Researcher. Research Institute for Physical Chemical Problems of the Belarusian State University

14, Leningradskaya Str., 220006, Minsk



H. I. Pozniak
Belarusian State University
Belarus

Pozniak Hleb I. – 4-year student of the Faculty of Chemistry

14, Leningradskaya Str., 220006, Minsk



P. S. Yakovets
Belarusian State University
Belarus

Yakovets Polina S. – 5-year student of the Faculty of Chemistry

14, Leningradskaya Str., 220006, Minsk



N. S. Frolova
Belarusian State University; Research Institute for Physical Chemical Problems of the Belarusian State University
Belarus

Frolova Nina S. – Researcher. Research Institute for Physical-Chemical Problems of the Belarusian State University

14, Leningradskaya Str., 220006, Minsk



V. M. Shkumatov
Belarusian State University; Research Institute for Physical Chemical Problems of the Belarusian State University
Belarus

Shkumatov Vladimir M.– Corresponding Member of the National Academy of Sciences of Belarus, D. Sc. (Biology), Professor, Head of the Laboratory. Research Institute for Physical-Chemical Problems of the Belarusian State University

14, Leningradskaya Str., 220006, Minsk



References

1. Ishiguro K., Ando T., Goto H. Novel application of 4-nitro-7-(1-piperazinyl)-2,1,3-benzoxadiazole to visualize lysosomes in live cells. Biotechniques, 2008, vol. 45, pp. 467–468. https://doi.org/10.2144/000112912

2. Fan J., Han Z., Kang Y., Peng X. A Two-Photon Fluorescent Probe for Lysosomal Thiols in Live Cells and Tissues. Scientific Reports, 2016, vol. 6, pp. 19562. https://doi.org/10.1038/srep19562

3. Xu Z., Wu Z., Tan H., Yan J., Liu X., Li J., Xu Z., Dong C., Zhang L. Piperazine-tuned NBD-based colorimetric and fluorescent turn-off probes for hydrogen sulfide. Analytical Methods, 2018, vol. 10, pp. 3375–3379. https://doi.org/10.1039/C8AY00797G

4. Faletrov Y. V., Karpushenkova V. S., Zavalinich V. A., Yakovets P. S., Shkredava A. D., Shkumatov V. M. Interaction of nitrobenzoxadiazole derivatives of piperazine and aniline with bovine serum albumine in silico and in vitro. Zhurnal Belorusskogo gosudarstvennogo universiteta. Khimiya = Journal of the Belarusian State University. Chemistry, 2021, no. 2, pp. 25–35 (in Russian). https://doi.org/10.33581/2520-257X-2021-2-25-35

5. Faletrov Y. V., Gilep K. A., Falchevskaya A. S., Horetski M. S., Panada J. V., Andrievskaya E. V., Rudaya E. V., Frolova N. S., Brzostek A., Plocinska R., Shkumatov V. M. In silico modeling of izoniazid-steroid conjugates interactions with cytochromes P450 of mycobacteria and their bioconversion in vitro by the cells. Biomeditsinskaya Khimiya, 2020, vol. 66, no. 5, pp. 378–385 (in Russian). https://doi.org/10.18097/PBMC20206605378

6. Lomize A. L., Pogozheva I. D., Mosberg H. I. Anisotropic solvent model of the lipid bilayer. 2. Energetics of insertion of small molecules, peptides, and proteins in membranes. Journal of Chemical Information and Modeling, 2011, vol. 51, pp. 930–946. https://doi.org/10.1021/ci200020k


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ISSN 1561-8331 (Print)
ISSN 2524-2342 (Online)